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Thermal shock could also be a consideration.The reason you don't want to wash biological media in tap water is because the chlorine in the tap water will kill the beneficial bacteria. You could use R/O water or new/clean treated (w/ dechlorinator) water.
When cleaning a filter you mainly want to remove the solid waste. You are not trying to chemically clean it. So, dissolved chemicals in tank water are not an issue. Rinsing the sponges from a Fluval 206 in a container of old tank water turns the water opaque brown. So, yes, tank water is much cleaner than the filter.