Neither glass nor acrylic will reduce the light enough to be concerned about, unless you let them get very dirty or covered with hard water deposits.
.......I find that 1/4 inch glass works really nice, though it is more expensive than the 1/8 you find at your average ace hardware or whatever. I use super glue and glue wooden drawer pulls onto them to give them easy handles. I put a couple on each.
Interesting idea! I'm going to try that on one of my 10gl tanks if I can find a free pc. Right now 2x4' Eggcrate is $14 a panel so it's right up there with glass....You could also do egg-crate as an alternative. It gives an open top feel....