I think genetic variation with the same organism is possible. It's only phenotype expression so it's a good possibility like how a person can have one eye a different color than the other.
Now if this plant was like the F3 or F4 generation of the mother plant, I could definitely see some sort of mutation or different gene expression popping up for sure. But this is just a single plant that returns each year from the roots, no reseeding, no self-pollination.Genetic variation within a single plant is possible. Plants can cross pollinate with themselves, diversifying allele frequency.
If that's not the case, it can also be do your regulation in gene expression.