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This is the same as a aquaponics set up. Not sure if you've heard of that or not. If you haven't you should look into them, perhaps you can find some of their ideas useful and decide to incorporate them into your project (substrate and designs of planter box).

I've been wanting to do a aquaponic set up on my tank for some time now to grow vegetables, but haven't made the effort yet.

From the title I thought it was going to be a over-tank sloped (to get the downstream river current effect), skinny 4ft long tank with hillstream fish :)
Great project nonetheless Mario
 
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