Finally got Jarduino to work! Took long enough. Turns out I wasnt using the right DS1307 library, and I just had to change the pin settings.
Now I'm going to run through all the code to try and learn all of it. I really appreciate how well commented this sketch is, that will be really useful.
I would love to change it around to get rid of the LED array graph, since I dont use an LED lighting system and get some real time weather data in there, and replace the monitors and alerts pane to include room temp (that one is easy) and the pH values of the tank.